Simulation 'Fluo_Diff' (Fluo_Diff.instr): running on 32 nodes (master is 're-grades-02', MPI version 3.1). [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize Fluo_Diff: Energy 25 [keV] [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize [Fluo_Diff] Initialize sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found # McXtrace 3.2 - Jul. 06, 2023: [pid 1325841] Signal 11 detected [proc 28] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: [pid 1325765] Signal 11 detected [proc 2] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: [pid 1325772] Signal 11 detected [proc 10] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found # Last I/O Error: No such file or directory sh: 1: cif2hkl: not found # Last I/O Error: No such file or directory # Last I/O Error: No such file or directory sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found # McXtrace 3.2 - Jul. 06, 2023: [pid 1325806] Signal 11 detected [proc 22] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # McXtrace 3.2 - Jul. 06, 2023: [pid 1325770] Signal 11 detected [proc 8] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # McXtrace 3.2 - Jul. 06, 2023: [pid 1325775] Signal 11 detected [proc 12] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # Last I/O Error: No such file or directory # Last I/O Error: No such file or directory # Last I/O Error: No such file or directory sh: 1: cif2hkl: not found # Last I/O Error: No such file or directory # McXtrace 3.2 - Jul. 06, 2023: [pid 1325814] Signal 11 detected [proc 24] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: [pid 1325768] Signal 11 detected [proc 6] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: [pid 1325790] Signal 11 detected [proc 16] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: [pid 1325800] Signal 11 detected [proc 20] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: [pid 1325769] Signal 11 detected [proc 7] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). sh: 1: cif2hkl: not found # Last I/O Error: No such file or directory sh: 1: cif2hkl: not found # Last I/O Error: No such file or directory # Last I/O Error: No such file or directory sh: 1: cif2hkl: not found # Last I/O Error: No such file or directory # Last I/O Error: No such file or directory sh: 1: cif2hkl: not found # Last I/O Error: No such file or directory sh: 1: cif2hkl: not found # Last I/O Error: No such file or directory # Last I/O Error: No such file or directory sh: 1: cif2hkl: not found # Last I/O Error: No such file or directory # Last I/O Error: No such file or directory # Last I/O Error: No such file or directory sh: 1: cif2hkl: not found # Last I/O Error: No such file or directory sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found # Last I/O Error: No such file or directory sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found sh: 1: cif2hkl: not found # McXtrace 3.2 - Jul. 06, 2023: [pid 1325842] Signal 11 detected [proc 30] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: [pid 1325757] Signal 11 detected [proc 0] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: [pid 1325766] Signal 11 detected [proc 4] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: [pid 1325773] Signal 11 detected [proc 11] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: [pid 1325779] Signal 11 detected [proc 13] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: [pid 1325783] Signal 11 detected [proc 14] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: [pid 1325802] Signal 11 detected [proc 21] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: [pid 1325793] Signal 11 detected [proc 18] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: [pid 1325819] Signal 11 detected [proc 26] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). sh: 1: cif2hkl: not found # McXtrace 3.2 - Jul. 06, 2023: [pid 1325787] Signal 11 detected [proc 17] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # McXtrace 3.2 - Jul. 06, 2023: [pid 1325756] Signal 11 detected [proc 1] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: [pid 1325771] Signal 11 detected [proc 9] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # Last I/O Error: No such file or directory # Last I/O Error: No such file or directory # Last I/O Error: No such file or directory # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: [pid 1325767] Signal 11 detected [proc 5] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: [pid 1325843] Signal 11 detected [proc 31] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: [pid 1325810] Signal 11 detected [proc 23] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # Last I/O Error: No such file or directory # Last I/O Error: No such file or directory # Last I/O Error: No such file or directory # McXtrace 3.2 - Jul. 06, 2023: [pid 1325818] Signal 11 detected [proc 25] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # McXtrace 3.2 - Jul. 06, 2023: [pid 1325758] Signal 11 detected [proc 3] SIGSEGV (Mem Error) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # Last I/O Error: No such file or directory # Last I/O Error: No such file or directory # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # McXtrace 3.2 - Jul. 06, 2023: [pid 1325823] Signal 11 detected [proc 27] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # McXtrace 3.2 - Jul. 06, 2023: [pid 1325785] Signal 11 detected [proc 15] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # McXtrace 3.2 - Jul. 06, 2023: [pid 1325797] Signal 11 detected [proc 19] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). # Last I/O Error: No such file or directory # Last I/O Error: No such file or directory # Last I/O Error: No such file or directory # McXtrace 3.2 - Jul. 06, 2023: [pid 1325840] Signal 11 detected [proc 29] SIGSEGV (Mem Error) # Simulation: Fluo_Diff (Fluo_Diff.instr) # Breakpoint: [_Sample_init] component Sample=PowderN() INITIALISE [/usr/share/mcxtrace/3.2/tools/Python/mxrun/../mccodelib/../../../samples/PowderN.comp:684] 0.00 % ( 0.0/10000000.0) # Date: Wed Oct 30 08:39:07 2024 # Started: Wed Oct 30 08:39:07 2024 # Last I/O Error: No such file or directory # McXtrace 3.2 - Jul. 06, 2023: Simulation stop (abort). -------------------------------------------------------------------------- Primary job terminated normally, but 1 process returned a non-zero exit code. Per user-direction, the job has been aborted. -------------------------------------------------------------------------- -------------------------------------------------------------------------- mpirun noticed that process rank 28 with PID 0 on node re-grades-02 exited on signal 3 (Quit). --------------------------------------------------------------------------