# directory: optimade_structure_agm003477599.cif-farhie-20241030-084512
# execute with: gnuplot -c <script>
set term svg
set autoscale fix

set output '/var/www/html/data/diffraction/optimade_structure_agm003477599.cif-farhie-20241030-084512/data/diffraction.svg'
set title 'Diffraction pattern optimade_structure_agm003477599.cif E0=25 [keV]'
set xlabel 'Angle [deg]'
set ylabel 'Intensity [p/s/bin]'
plot '/var/www/html/data/diffraction/optimade_structure_agm003477599.cif-farhie-20241030-084512/data/diffraction.dat' using 1:2 with linespoints title 'Diffraction'

set logscale y
set ylabel 'Intensity [p/s/bin] (log-scale)'
set output '/var/www/html/data/diffraction/optimade_structure_agm003477599.cif-farhie-20241030-084512/data/diffraction_log.svg'
replot

set view map
unset logscale
set logscale cb
set xlabel 'Angle [deg]'
set ylabel 'Height [cm]'
set output '/var/www/html/data/diffraction/optimade_structure_agm003477599.cif-farhie-20241030-084512/data/diffraction_2d.svg'
plot '/var/www/html/data/diffraction/optimade_structure_agm003477599.cif-farhie-20241030-084512/data/diffraction_2d.dat' matrix using 1:2:3 index 0 w image title 'Diffraction 2D'


set output '/var/www/html/data/diffraction/optimade_structure_agm003477599.cif-farhie-20241030-084512/data/Fluorescence.svg'
set title  'Fluorescence optimade_structure_agm003477599.cif E0=25 [keV]'
set xlabel 'Energy [keV]'
set ylabel 'Intensity [p/s/bin]'
unset logscale
plot '/var/www/html/data/diffraction/optimade_structure_agm003477599.cif-farhie-20241030-084512/data/Fluorescence.dat' using 1:2 with linespoints title 'Fluorescence'

set output '/var/www/html/data/diffraction/optimade_structure_agm003477599.cif-farhie-20241030-084512/data/Fluorescence_all_log.svg'
set title  'Fluorescence/Compton/Rayleigh (log) optimade_structure_agm003477599.cif E0=25 [keV]'
set xlabel 'Energy [keV]'
set ylabel 'Intensity [p/s/bin]'
set logscale y
plot '/var/www/html/data/diffraction/optimade_structure_agm003477599.cif-farhie-20241030-084512/data/Fluorescence_all.dat' using 1:2 with linespoints title 'Fluorescence/Compton/Rayleigh (log)'

set output '/var/www/html/data/diffraction/optimade_structure_agm003477599.cif-farhie-20241030-084512/data/Fluorescence_log.svg'
set title  'Fluorescence optimade_structure_agm003477599.cif E0=25 [keV] (log)'
set xlabel 'Energy [keV]'
set ylabel 'Intensity [p/s/bin]'
set logscale y
plot '/var/www/html/data/diffraction/optimade_structure_agm003477599.cif-farhie-20241030-084512/data/Fluorescence.dat' using 1:2 with linespoints title 'Fluorescence (log)'

set output '/var/www/html/data/diffraction/optimade_structure_agm003477599.cif-farhie-20241030-084512/data/Compton.svg'
set title  'Compton optimade_structure_agm003477599.cif E0=25 [keV]'
set xlabel 'Energy [keV]'
set ylabel 'Intensity [p/s/bin]'
set logscale y
plot '/var/www/html/data/diffraction/optimade_structure_agm003477599.cif-farhie-20241030-084512/data/Compton.dat' using 1:2 with linespoints title 'Compton'

set output '/var/www/html/data/diffraction/optimade_structure_agm003477599.cif-farhie-20241030-084512/data/Rayleigh.svg'
set title  'Rayleigh optimade_structure_agm003477599.cif E0=25 [keV]'
set xlabel 'Energy [keV]'
set ylabel 'Intensity [p/s/bin]'
set logscale y
plot '/var/www/html/data/diffraction/optimade_structure_agm003477599.cif-farhie-20241030-084512/data/Rayleigh.dat' using 1:2 with linespoints title 'Rayleigh'