Matplotlib created a temporary config/cache directory at /tmp/matplotlib-7fq9qj3r because the default path (/var/www/.config/matplotlib) is not a writable directory; it is highly recommended to set the MPLCONFIGDIR environment variable to a writable directory, in particular to speed up the import of Matplotlib and to better support multiprocessing. INFO: Creating lattice/cell object from /var/www/html/data/material_modeling/MoS2_ICSD_24000.scf.in-QuantumEspresso-paveldudin-20230928-152725/MoS2_ICSD_24000.scf.in Traceback (most recent call last): File "/usr/bin/material_modeling", line 1691, in atoms, settings, properties, generated = set_atoms(settings['atoms'], settings) # also stored as settings['Atoms'] ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/bin/material_modeling", line 227, in set_atoms atoms = ase.io.read(filename) ^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/ase/io/formats.py", line 736, in read return next(_iread(filename, slice(index, None), format, io, ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/ase/parallel.py", line 275, in new_generator for result in generator(*args, **kwargs): File "/usr/lib/python3/dist-packages/ase/io/formats.py", line 803, in _iread for dct in io.read(fd, *args, **kwargs): File "/usr/lib/python3/dist-packages/ase/io/formats.py", line 557, in wrap_read_function yield read(filename, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/ase/utils/__init__.py", line 486, in iofunc obj = func(fd, *args, **kwargs) ^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/ase/io/espresso.py", line 539, in read_espresso_in positions_card = get_atomic_positions( ^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/ase/io/espresso.py", line 807, in get_atomic_positions position = np.dot((infix_float(split_line[1]), ^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/lib/python3/dist-packages/ase/io/espresso.py", line 1194, in infix_float return float(eval_no_bracket_expr(text)) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ TypeError: float() argument must be a string or a real number, not 'NoneType'