Package: adxv
Version: 1.9.14
Architecture: amd64
Maintainer: Andrew Arvai <arvai@scripps.edu>
Installed-Size: 12136
Depends: libgl1-mesa-glx, libgomp1, libx11-6, libice6, libsm6, libxau6, libxt6
Filename: dists/bullseye/non-free/binary-amd64/adxv_1.9.14_amd64.deb
Size: 6641536
MD5sum: c3e31b76ebed2707e6ebbddc1b23e73e
SHA1: 161784b7d345856fa8f32b6783143ab2e54a73f5
SHA256: d3121f9e33cb430b7d4627ab85c2bf1baf40236c067473a109f3bae469c06be5
Section: science
Priority: optional
Homepage: https://www.scripps.edu/tainer/arvai/adxv.html
Description: A program to display X-Ray diffraction images
 Adxv can be used to display and analyze 2-D area detector data. It is optimized to display X-Ray crystallography diffraction images. The data may be displayed as a 1-D cross section, 2-D image or 3-D surface. Sequential images may be displayed as an animation. The magnification, contrast and color mapping are adjustable. Displayed data may be saved in a variety of formats including ASCII, SMV/IMG, TIFF, JPEG and Postscript. Adxv will run on most versions of Linux and OSX. It is based on X11/Motif so an X-server is required. It will run on Windows if the Cygwin libraries and X-server have been installed.
 .
 Many common detector and data formats are recognized, including:
 ADSC
 Mar ccd
 Mar image plate (old and new format)
 Raxis II & IV
 Crystallographic Binary Format (CBF)
 XDS .pck files
 European Data Format (EDF)
 Numerical Python (NUMPY)
 Hierarchical Data Format (HDF5)
 Tagged Image File Format (TIFF)
 Raw binary integer and floating point data
 .
 Adxv is freely available to everyone. There is no registration, license or fee required to use it.

Package: anarod
Version: 1.7-1
Architecture: amd64
Maintainer: Picca Frédéric-Emmanuel <picca@debian.org>
Installed-Size: 605
Depends: libc6 (>= 2.14), libgfortran5 (>= 8), libncurses6 (>= 6), libpng16-16 (>= 1.6.2-1), libtinfo6 (>= 6), libx11-6, libxau6, libxcb1, libxdmcp6, pgplot5
Filename: dists/bullseye/non-free/binary-amd64/anarod_1.7-1_amd64.deb
Size: 192508
MD5sum: 4feb874d279f6f7af4683a0d1ff6c231
SHA1: 154148eea17472cde05974381e1ce49a66568d10
SHA256: 538cd1c997123fb9064c58f3aaefa1587b9345784a4dcdacd936728502ec3030
Section: science
Priority: optional
Homepage: <insert the upstream URL, if relevant>
Description: Surface diffraction data analysis suite.
 Surface diffraction data analysis suite.

Package: atsas
Version: 3.1.3
Architecture: amd64
Maintainer: ATSAS team <atsas@embl-hamburg.de>
Installed-Size: 1018316
Depends: libc6, libgcc1, libquadmath0, libstdc++6, libxml2 (>= 2.7.0), libtiff5, liblzma5
Suggests: pymol, python
Filename: dists/bullseye/non-free/binary-amd64/ATSAS-3.1.3-1_amd64.deb
Size: 389924214
MD5sum: bd07179caa6423743136497d73b5147f
SHA1: 9ecef0a13b0c531ed3637822c3425b57b948b812
SHA256: 03c3b7abdc1524e087d86e735d995bf1a022aadf72d59784f97f043b13a859af
Section: non-free/science
Priority: optional
Description: ATSAS, a program suite for small angle scattering data analysis from biological macromolecules
 Small angle scattering data analysis from biological macromolecules

Package: chimera
Source: https://svn.cgl.ucsf.edu/svn/chimera/trunk
Version: 1.15rc
Architecture: amd64
Maintainer: UCSF <chimera@cgl.ucsf.edu>
Installed-Size: 600892
Filename: dists/bullseye/non-free/binary-amd64/chimera_1.15rc_amd64.deb
Size: 120404536
MD5sum: b33345b2f281d6b6497e67e81140d834
SHA1: 0f92e7b34276eb6bf846d6195fe43fa97e574265
SHA256: f349b84617c9edde894d4a3c466c1bff12ebe6ee29630eaa4172f168b01d2f46
Section: science
Priority: optional
Homepage: https://www.cgl.ucsf.edu/chimera/
Description: an Extensible Molecular Modeling System
 UCSF Chimera is a program for the interactive visualization and analysis of molecular structures and related data, including density maps, trajectories, and sequence alignments. It is available free of charge for noncommercial use.

Package: code
Version: 1.74.3-1673284829
Architecture: amd64
Maintainer: Microsoft Corporation <vscode-linux@microsoft.com>
Installed-Size: 394545
Depends: ca-certificates, libasound2 (>= 1.0.16), libatk-bridge2.0-0 (>= 2.5.3), libatk1.0-0 (>= 2.2.0), libatspi2.0-0 (>= 2.9.90), libc6 (>= 2.14), libc6 (>= 2.17), libc6 (>= 2.2.5), libcairo2 (>= 1.6.0), libcups2 (>= 1.6.0), libcurl3-gnutls | libcurl3-nss | libcurl4 | libcurl3, libdbus-1-3 (>= 1.5.12), libdrm2 (>= 2.4.38), libexpat1 (>= 2.0.1), libgbm1 (>= 8.1~0), libglib2.0-0 (>= 2.16.0), libglib2.0-0 (>= 2.39.4), libgtk-3-0 (>= 3.9.10), libgtk-3-0 (>= 3.9.10) | libgtk-4-1, libnspr4 (>= 2:4.9-2~), libnss3 (>= 2:3.22), libnss3 (>= 3.26), libpango-1.0-0 (>= 1.14.0), libsecret-1-0 (>= 0.18), libx11-6, libx11-6 (>= 2:1.4.99.1), libxcb1 (>= 1.9.2), libxcomposite1 (>= 1:0.4.4-1), libxdamage1 (>= 1:1.1), libxext6, libxfixes3, libxkbcommon0 (>= 0.4.1), libxkbfile1, libxrandr2, xdg-utils (>= 1.0.2)
Recommends: libvulkan1
Conflicts: visual-studio-code
Replaces: visual-studio-code
Provides: visual-studio-code
Filename: dists/bullseye/non-free/binary-amd64/code_1.74.3-1673284829_amd64.deb
Size: 97998844
MD5sum: cc2401d0d3bf08ae61a83834e2621057
SHA1: ea403483f271674719e1cad10c2f8527de320f9c
SHA256: 0e84eedab8b1fca67597c03303185504d40da93b4953d73c7f4ef8a8df8e3eb8
Section: devel
Priority: optional
Homepage: https://code.visualstudio.com/
Description: Code editing. Redefined.
 Visual Studio Code is a new choice of tool that combines the simplicity of
 a code editor with what developers need for the core edit-build-debug cycle.
 See https://code.visualstudio.com/docs/setup/linux for installation
 instructions and FAQ.

Package: coot
Source: https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/source/
Version: 0.9.8-bullseye
Architecture: amd64
Maintainer: Paul Emsley <pemsley@mrc-lmb.cam.ac.uk>
Installed-Size: 2889948
Depends: libxext-dev, libxt-dev, libglu1-mesa-dev, mesa-common-dev, libgtk2.0-dev, libgnomecanvas2-dev
Filename: dists/bullseye/non-free/binary-amd64/coot_0.9.8-bullseye_amd64.deb
Size: 431197948
MD5sum: 69833d18e83661dcd78adf26b257cd9a
SHA1: 0d795a4f38302993c90f61e96f6e29daf2f03827
SHA256: 74d5b1e9659b39e3377dde29acfe1f79e8cbc2147d44f76240ae96b1f6e40554
Section: science
Priority: optional
Homepage: https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/
Description: COOT macromolecular model building, model completion and validation
 Coot is for macromolecular model building, model completion and validation, particularly suitable for protein modelling using X-ray data.
 .
 Coot displays maps and models and allows model manipulations such as idealization, real space refinement, manual rotation/translation, rigid-body fitting, ligand search, solvation, mutations, rotamers, Ramachandran plots, skeletonization, non-crystallographic symmetry and more.

Package: crystfel
Source: https://gitlab.desy.de/thomas.white/crystfel
Version: 0.10.1
Architecture: amd64
Maintainer: Thomas White <thomas.white@desy.de>
Installed-Size: 144804
Depends: libhdf5-dev, libfftw3-dev, libgtk-3-dev, libgdk-pixbuf2.0-dev, libcairo2-dev, ocl-icd-opencl-dev, libzmq3-dev, zlib1g-dev, libmsgpack-dev, libccp4-dev, libgsl-dev
Filename: dists/bullseye/non-free/binary-amd64/crystfel_0.10.1_amd64.deb
Size: 19754248
MD5sum: 2a933a2bfa1414a6a8e3bb628baa0023
SHA1: 6da6f49f2cf0a6c17db55cdf3d010bf281ab3d66
SHA256: 5a2e14343994201f3b256f56fe858db7b6f2a655c589c5bfd8de1f1727b5bfe7
Section: science
Priority: optional
Homepage: https://www.desy.de/~twhite/crystfel/
Description: CrystFEL is a suite of programs for processing diffraction data acquired "serially" for FEL / SFX
 CrystFEL is a suite of programs for processing diffraction data acquired "serially" in a "snapshot" manner, such as when using the technique of Serial Femtosecond Crystallography (SFX) with a free-electron laser source. CrystFEL comprises programs for indexing and integrating diffraction patterns, scaling and merging intensities, simulating patterns, calculating figures of merit for the data and visualising the results. Supporting scripts are provided to help at all stages, including importing data into CCP4 for further processing.
 .
 Installation resides in /usr/local/bin /usr/local/lib/x86_64-linux-gnu /usr/local/include/ /usr/local/share/man/man1

Package: debreate
Version: 0.7.next17-1
Architecture: all
Maintainer: Jordan Irwin <antumdeluge@gmail.com>
Installed-Size: 1356
Depends: python2.7, python-wxgtk3.0 | python-wxgtk2.8 | python3-wxgtk4.0, fakeroot, dpkg (>= 1.0.0), file, util-linux (>= 2.0.0), debianutils (>= 4.0.0)
Recommends: lintian, coreutils (>= 8.0), xdg-utils, man-db, gzip (>= 1.0), binutils, gvfs-bin, x11-server-utils
Suggests: gdebi | gdebi-kde
Filename: dists/bullseye/non-free/binary-amd64/debreate_0.7.next17-1_all.deb
Size: 620820
MD5sum: 2db5f415816f857ee672e08d5b62a5a2
SHA1: 470d9f045a391b38fc7a60d6c146acc0f141fd90
SHA256: 3b72500e38037c4951cd315e1fc6d34d5f1cd39f0dff78a516355a6873b89c59
Section: devel
Priority: optional
Homepage: https://antumdeluge.github.io/debreate-web/
Description: Debian Package Builder
 Debreate is a utility to aid in creating installable Debian packages (.deb).
 .
 The goal behind the project is to make developing for Debian based Linux
 distributions more appealing, with an easy to use interface for packaging
 applications, artwork, media, themes, etc.
 .
 Currently, it only supports "binary" packaging which allows packaging of
 anything that does not require being compiled from source, such as scripted
 applications or media. These packages can then be used for personal
 distribution.
 .
 Plans for using backends such as dh_make & debuild for creating source packages
 are in the works. But source packaging can be quite different & is a must if
 you want to get your packages into a distribution's official repositories or a
 Launchpad Personal Package Archive (PPA).

Package: dragonfly
Version: 2021.1
Architecture: amd64
Maintainer: ORS <support@theobjects.com>
Installed-Size: 12179372
Filename: dists/bullseye/non-free/binary-amd64/dragonfly_2021.1_amd64.deb
Size: 2976068584
MD5sum: 6255a6fcd33074cc879693c0404ce160
SHA1: 99463ffa206629b61b4ecd949bc422f4b121482e
SHA256: 3bc82315b45261b054fa7e060da34709bc90bb5c427daaabbb61737d4a076abd
Section: science
Priority: optional
Homepage: https://www.theobjects.com/dragonfly/
Description: multi-scale multi-modality image data treatment
 Dragonfly is a software platform for the intuitive inspection of multi-scale multi-modality image data. Its user-friendly experience translates into powerful quantitative findings with high-impact visuals, driven by nuanced easy-to-learn controls.

Package: eiger2cbf
Source: https://github.com/biochem-fan/eiger2cbf
Version: 160415
Architecture: amd64
Maintainer: Takanori Nakane <biochem_fan@users.sourceforge.jp>
Installed-Size: 2780
Depends: zlib1g
Filename: dists/bullseye/non-free/binary-amd64/eiger2cbf_160415_amd64.deb
Size: 861212
MD5sum: c77e1f44429eb41541dd34e3e9999c86
SHA1: 5660d4ab112bf98bada350ccb0496149ceb315a7
SHA256: 5aad44d4413961d7a5cb13d42204e7ae0487f6382a9c65b807fa53cce536ed89
Section: science
Priority: optional
Homepage: https://github.com/biochem-fan/eiger2cbf
Description: EIGER HDF5 to miniCBF converter
 eiger2cbf is a simple program that converts diffraction images from EIGER in the HDF5 format to the miniCBF format. This program is intended to be used with MOSFLM. You do not need this program to process images with DIALS; DIALS can process HDF5 images directly (DIALS 1.2.0, which comes with CCP4 7.0.13).

Package: fastosh
Version: 1.0.3
Architecture: amd64
Maintainer: Gauthier Landrot <gautier.landrot@synchrotron-soleil.fr>
Installed-Size: 125972
Depends: mcrinstaller-v98
Filename: dists/bullseye/non-free/binary-amd64/fastosh_1.0.3_amd64.deb
Size: 116663740
MD5sum: 8342332263ecc482f7fa81989abc49ac
SHA1: 344a1e3e6e03fc5b3444dae7b4b4b9213d996890
SHA256: be4afc2510545b2ce17bb6e39a513210882f5b9c68164338f09cdca50ed6ba0b
Section: science
Priority: optional
Homepage: https://www.synchrotron-soleil.fr/en/beamlines/samba
Description: synchrotron absorption/fluorescence spectroscopy (XAFS) data treatment
 SAMBA proposes a software for XAFS data treatment, available for Windows, Mac, and Linux.
 .
 .
 Open the PDF file « Version description » to find out what’s new in the latest version.
 .
 .
 .
 Unique functionalities for all XAFS Users:
 .
     To rapidly upload to the program >100 XAFS spectra (ASCII files OK)
     To automatically display averages & estimate random noise
     To create chunk merges from a set of scans
     To perform PCA, Target Transformation, or MCR-ALS
     To do Linear Combination Fitting using a friendly interface
     To smooth a data set using a 2D (energy & tile directions) filter
     To deglitch scans using multiple approaches
     To easily create 3D plots
 .
 .
 .
 Specific functionalities for SAMBA Users:
 .
     To visualize and exploit all fluorescence data saved in SAMBA HDF files
     To extract artefact-free, optimized XAFS spectra using fluorescence detector pixel & MCA data
     To access to all contextual info relative to each spectrum (motor positions, scan & dcm parameters, etc…)

Package: fiji
Source: https://github.com/fiji/fiji
Version: 2022.01
Architecture: all
Maintainer: NIH <imagej@list.nih.gov>
Installed-Size: 495900
Filename: dists/bullseye/non-free/binary-amd64/fiji_2022.01_all.deb
Size: 312421784
MD5sum: 6d4ac96a195f91618f52b7c81dbd5c6b
SHA1: 1c22f721e308e7275b67c86369ff3335a4b17ad9
SHA256: 7b7316ce59b9c704f7f8e312a888d7ac1e3817ab01e919399ee785f6ab15f0a0
Section: science
Priority: optional
Homepage: https://imagej.net/software/fiji/
Description: Image processing package, batteries-included distribution of ImageJ2
 Fiji is an image processing package—a “batteries-included” distribution of ImageJ2, bundling a lot of plugins which facilitate scientific image analysis.

Package: foxtrot
Version: 3.5.10
Architecture: all
Maintainer: GIRARDOT Raphael <raphael.girardot@synchrotron-soleil.fr>
Installed-Size: 295080
Depends: default-jre
Filename: dists/bullseye/non-free/binary-amd64/foxtrot_3.5.10_all.deb
Size: 86904892
MD5sum: 4275c4047d475536ec6267ef89a84406
SHA1: 0cac4a4fc3d168e1b7a9c4fe193fa263ccb4347b
SHA256: 91fcf0d8f17bd2005ad29cd9b4c9c71d9980a661d5a8f57ac4c851e11d5f5c92
Section: science
Priority: optional
Homepage: https://www.synchrotron-soleil.fr/fr/lignes-de-lumiere/swing
Description: Data reduction and treatment X-ray synchrotron data
 FOXTROT is a software package dedicated to the visualization, reduction and pre-analysis of X-ray
 scattering data. FOXTROT enables the following data processing:
 .
 - 2D raw pattern visualization
 - 2D data masking
 - Horizontal and vertical 2D pattern projections
 - Azimuthal averaging of one or several images, with the resulting 1D curve(s) including the
 statistical error bars
 - Basic data fitting
 .
 FOXTROT’s graphical interface is user friendly and allows very rapid data processing.
 Most FOXTROT features are accessible through dialog boxes or pull-down menus. Keyboard shortcuts are
 provided for quickly navigating or for bypassing the menu structure. This manual provides a detailed
 description of the features available in FOXTROT and of the conventions employed by the software.
 Standard procedures for processing and analyzing data are equally provided.
 FOXTROT can handle the edf and nexus images file formats. Detectors with non-square pixels are not
 supported.
 .
 FOXTROT is especially designed for SAXS data treatment.

Package: fullprof
Version: 13.10-2
Architecture: amd64
Maintainer: Juan Rodriguez-Carvajal <fullprof@ill.fr>
Installed-Size: 87816
Depends: bash, libjpeg62:i386, libxt6:i386, libxmu6:i386, libxft2:i386, libxp6:i386
Filename: dists/bullseye/non-free/binary-amd64/fullprof_13.10-2_amd64.deb
Size: 60845622
MD5sum: 0274bff08c144fe3d38252554bc7dd9b
SHA1: 9855b96995ecd71db3a241056b425da54817561f
SHA256: 6710b62d8ddb622c8d2fcbe980a1c94c29a2a213e893e52b2383d6883898e76b
Section: Science
Priority: optional
Homepage: http://www.ill.eu/sites/fullprof/php/programs.html
Description: FullProf - Crystallographic tools for Rietveld, profile matching and integrated intensity refinements of X-ray and/or neutron data (neutron diffraction)
 The FullProf Suite (for Windows and Linux) is formed by a set of crystallographic programs (FullProf, WinPLOTR, EdPCR, GFourier, etc...) mainly developed for Rietveld analysis (structure profile refinement) of neutron (constant wavelength, time of flight, nuclear and magnetic scattering) or X-ray powder diffraction data collected at constant or variable step in scattering angle 2theta.
 .
 The different programs can be run either in stand alone form (from a console window or clicking directly in a shortcut) or from the interfaces WinPLOTR and/or EdPCR.
 .
 The programs within the FullProf Suite are distributed in the hope that they will be useful, but WITHOUT ANY WARRANTY of being free of internal errors. In no event will the authors (or their institutions) be liable to you for damages, including any general, special, incidental or consequential damages arising out of the use or inability to use the programs (including but not limited to loss of data or data being rendered inaccurate or losses sustained by you or third parties or a failure of the program to operate with any other programs). The authors are not responsible for erroneous results obtained with the programs.
 .
 The installation location is /usr/local/fullprof
 To start the FullProf toolbar, use 'tfp'
 .
 Packaged by E. Farhi, ILL.

Package: geant4
Source: https://github.com/Geant4/geant4/releases
Version: 11.1.1-bullseye
Architecture: amd64
Maintainer: GEANT4 Team <Ben.Morgan@warwick.ac.uk>
Installed-Size: 2262556
Filename: dists/bullseye/non-free/binary-amd64/geant4_11.1.1-bullseye_amd64.deb
Size: 1557388864
MD5sum: 62d70f11f50e14334087a74fd573dcba
SHA1: 2da4af7b056ff930f3e782429465ede20d88973c
SHA256: 903d10eeb33375296ad7deec11b41f1bda2085ae24f151a5e4b1926c11e8eb19
Section: science
Priority: optional
Homepage: https://geant4.web.cern.ch
Description: CERN GEANT4 Toolkit for the simulation of the passage of particles through matter.
 Geant4 is a toolkit to create simulations of the passage of particles or radiation through matter. Applications built on Geant4 can simulate any setup or detector and radiation source, and record chosen output of physical quantities due to source particles and secondaries interacting with the material of the setup.
 .
 Geant4 provides complete functionality for all areas of the simulation of particle transport. It can be used to
 .
     create a model of a geometry with shapes and materials,
     locate points and navigate tracks in that model,
     apply the effects of physics interactions and generate secondary particles,
     record selected information either as tallies or create hits (that are used to generate detector response),
     visualize a setup’s geometry and the particle tracks passing through it, and
     interact with an application via an extensible terminal or graphical user interface.
 .
 It includes a complete set of physics processes for electromagnetic, strong and weak interactions of particles in matter over an energy range that starts from milli-eV (for thermal neutrons), eV (electrons) or typically keV (hadrons), up to hundreds of GeV (or even in part up to 100 TeV). For each type of interaction, a complete set of physics model implementations is provided. Some choices of modeling approaches are available and ready to be used as coherent configurations (named physics lists).
 .
 Geant4 source code is available under an open source license, and is written to be readable. The toolkit also includes example applications demonstrating several simpler setups and selected full applications from different domains. For some domains these applications have comprehensive capabilities, whereas others provide a starting point for building your own custom application.
 .
 It is also possible to use Geant4 indirectly through a program designed as a customised tool for an application domain, or to create a fully independent stand-alone application for a specific setup or detector.
 .
 Any Geant4 application can and must choose whether to preconfigure, select or input beam / source parameters or details of its setup, and whether to record information using standard tallies or create custom ways to collect and output quantities of interest. It will typically select from a set of existing pre-packaged physics configurations (physics lists), developed and typically tested within an application domain, unless its authors undertake the substantially more challenging task of customising or recreating such a configuration from scratch.

Package: gsas
Version: 1.1188
Architecture: amd64
Maintainer: Allen C. Larson and Robert B. Von Dreele, B. H. Toby
Installed-Size: 97700
Depends: tcsh, tcl, tk, libc6-i386, libx11-6
Filename: dists/bullseye/non-free/binary-amd64/gsas-1.1188-amd64.deb
Size: 33027262
MD5sum: c62d9b2c573d5c995dbccaa3d17eb3b1
SHA1: c3a844ddd5c5092b7d91ba3a212ecf77703e1df4
SHA256: ed1c1dcdf0bb2dcde13739707f1838973ebb84bb00f2aa691aea9049aa3a4d6a
Section: Science
Priority: optional
Homepage: http://www.ncnr.nist.gov/xtal/software/gsas.html
Description: GSAS - General Structure Analysis System (neutron/x-ray diffraction)
 GSAS (General Structure Analysis System) is a comprehensive system for the refinement of structural models to both x-ray and neutron diffraction data. The GSAS package can be used with both single-crystal and powder diffraction data (Rietveld analysis), even both simultaneously. Neutron data can be either from single-wavelength instruments, or for those a bit more masochistic, time-of-flight instrumentation. Up to 99 different sets of data can be modeled using mixtures of up to 9 different phases.
 .
 GSAS has been created by Allen C. Larson and Robert B. Von Dreele of Los Alamos National Laboratory. Executable versions of GSAS are distributed more-or-less freely (see the friendly message from the Regents of the University of California, below), but the source code is not distributed (don't complain to me on this one, I agree with you).
 .
 The installation location is /usr/local/gsas
 .
 Packaged by E. Farhi, ILL.

Package: huygens
Version: 20.04.0p5
Architecture: amd64
Essential: no
Maintainer: Scientific Volume Imaging B.V. <info@svi.nl>
Installed-Size: 360574
Pre-Depends: bash
Depends: libc6,libfontconfig1,libx11-6,libxft2
Filename: dists/bullseye/non-free/binary-amd64/huygens_20.04.0-p5_amd64.deb
Size: 116987322
MD5sum: 49f464de2ca86fd9ab277a865bede655
SHA1: f92272938278c8829e38494dd77bc420e63a48b0
SHA256: 446456e212ecaae59486911ee71e220c18a1e4f0fe776e077bdf9ebd11a48da4
Section: science
Priority: optional
Homepage: https://svi.nl/
Description: The Huygens Suite
 End User License Agreement (EULA) for the Huygens software for 2D and 3D fluorescent microscopic image analysis (deconvolution, visualization and analysis) for images generated by mainstream brands of light microscopes.
 Please read this EULA carefully, by installing or using the Huygens software that accompanies them you agree to its terms. If you do not agree with them do not install or use the Huygens software.
 .
 Microscope types 2D and 3D supported by the Huygens software:
  • Confocal (1&2 photon)
  • Widefield, brightfield
  • Spinning disc
  • Light-sheets (all types)
  • Array scanning systems (a.o. Airyscan)
  • STED
  • Rescan
  • Single Molecule Light microscopes (All types among them PALM, STORM etc.)
 .
 Functionalities:
  • Huygens removes blur from your images, improves resolution and contrast plus denoises in one go with your choice from its four different deconvolution solutions.
  • Huygens can correct for chromatic aberration, bleed-through, instability, bleaching.
  • Huygens can visualize and make movies of all microscopic 2D, 3D single and multi-channel (time-series) data-sets.
  • Huygens can stitch and fuse microscopic 2D, 3D single and multi-channel (time-series) data-sets.
  • Huygens can analyze microscopic 2D, 3D single and multi-channel (time-series) data-sets via colocalization, object analysis and tracking.
 .
 Depending on your licensing or subscription all or part of the above will be available for you.
 .
 Important information: The End user License Agreement (EULA) is a legal and enforceable agreement between you (either an individual or an entity ) and Scientific Volume Imaging B.V.
 .
 ***** Licensed and Freeware functionalities *****
 .
 Huygens is commercial software and requires a subscription or a license from SVI to enable its functionalities.
 To get a test license or choose for subscription, see in Huygens Help=> about or Huygens Everywhere.
 For more information, see https://svi.nl/
 .
 ***** License Restrictions *****
 User agrees that it will not itself, or through any parent, subsidiary, affiliate, agent or other third party.
  a) sell, lease, license, sub-license, encumber or otherwise deal with any portion of the Software or Documentation;
  b) decompile, disassemble, or reverse engineer any portion of the Software.
  c) write or develop any derivative software or any other software program based on the Confidential Information provided by SVI;
  d) use the Software to provide processing services to third parties, commercial time-sharing, rental or sharing arrangements, or on a "service bureau" basis;
  e) exceed the number of authorized subscriptions, floating license concurrent users or authorized workstations.
 In no event will SVI be liable for any loss of profits, loss of use, business interruption, loss of data, cost of cover or indirect, special, incidental or consequential damages of any kind in connection with or arising out of the use of the Software or services performed hereunder or any delay in delivery the Software or said services unless (a) such damage or loss has been caused by intentional misconduct and/or gross negligence of SVI; or (b) such damage consists of death or personal injury caused by the negligence of SVI. SVI will not be held responsible for 3rd party hardware or software that prevent the SVI Software Products from performing to specifications.
 .
 This Agreement starts on installation of the Software and will remain in force with or without a Software license string or login via valid credentials.
 By installing it you agree to be kept up-to-date on new Huygens releases and patches and agree to receive via email Huygens product information.
 .
 ***** Warranty *****
 .
 This software is provided 'as-is', without any express or implied warranty. In no event will SVI be held liable for any damages arising from the use of this software.  Specifically SVI does not warrant that the software will be error free or will perform in an uninterrupted manner. To the greatest extent allowed by law, SVI specifically disclaims all implied warenties.
 .
  Copyright (C) 1995-2020 Scientific Volume Imaging Holding B.V.
  Laapersveld 63
  1213VB Hilversum
  The Netherlands
  email: info@svi.nl
  https://svi.nl

Package: idl
Version: 8.5
Architecture: amd64
Maintainer: Excelvis <idl@excelisvis.com>
Installed-Size: 397180
Filename: dists/bullseye/non-free/binary-amd64/idl_8.5_amd64.deb
Size: 103424512
MD5sum: 3efd0fb0e8cd030c89ffd2dede535153
SHA1: a218e911c86a4450cb3ca5138f3ebb55e445e749
SHA256: 02f52f09a5fc389c67ce943ba6036673642e6febbdf23933f56bfe365942b59f
Section: science
Priority: optional
Homepage: https:/www.nv5geospatialsoftware.com/Products/IDL
Description: IDL Interactive Data Language
 IDL (Interactive Data Language) software is the trusted scientific programming language used across disciplines to create meaningful visualizations out of complex numerical data. From small-scale analysis programs to widely deployed applications, IDL provides the comprehensive computing environment you need to effectively get information from your data.

Package: idl-axis2000
Version: 21.03
Architecture: amd64
Maintainer: Adam P. Hitchcock <aph@mcmaster.ca>
Installed-Size: 34212
Depends: idl
Filename: dists/bullseye/non-free/binary-amd64/idl-axis2000_21.03_amd64.deb
Size: 19745156
MD5sum: 90d328a3604f6b5746481ff735f2a568
SHA1: 518e82ec3f10154530d2c5f7d967684b0128b59f
SHA256: 26c3e990ce2b3c3ff04f99cea63147be1f2ee7fde25983ccdef29df4eacd3ea1
Section: science
Priority: optional
Homepage: http://unicorn.chemistry.mcmaster.ca/axis/aXis2000-download.html
Description: Analysis of X-ray Images and Spectra
 aXis2000 - Analysis of X-ray microscopy Images and Spectra - is an IDL widget for viewing, comparing and processing X-ray microscopy images and spectra.

Package: idl-xrdua
Version: 7.7.1.1
Architecture: amd64
Maintainer: W de Nolf <woutdenolf@users.sf.net>
Installed-Size: 31660
Depends: idl
Filename: dists/bullseye/non-free/binary-amd64/idl-xrdua_7.7.1.1_amd64.deb
Size: 8717812
MD5sum: f3d4922fbb58b07cc1e4678bc3f3ea34
SHA1: be2ad41f1e1f915201d81e350e0af449f4f49706
SHA256: cf4e7f08c912ab15b69c447fbd0fabdfad8b578f5d303fc102093e94594180db
Section: science
Priority: optional
Homepage: https://software.pan-data.eu/software/69/xrdua
Description: processing of two dimensional x-ray diffraction images
 XRDua - software package developed by the Antwerp X-ray Imaging/Instrumentation Laboratory (AXiL) at the University of Antwerp. Its main purpose is to automate the processing of two dimensional x-ray diffraction images from scanning micro-XRPD or micro-XRPD tomography. It accepts images from flat area detectors and allows correction, calibration and modeling (Rietveld, Pawley, Pattern Decomposition). The primary goal is to visualize crystalline phase distributions in projection (2D scanning) or in a virtual cross section (tomography) of the object under investigation. Apart from the amount of material, structural properties and their changes within the object can be calculated and visualized as well.

Package: imod
Source: https://bio3d.colorado.edu/imod/nightlyBuilds/IMOD/
Version: 4.11.23
Architecture: amd64
Maintainer: David Mastronarde <imod@colorado.edu>
Installed-Size: 785784
Depends: default-jre
Filename: dists/bullseye/non-free/binary-amd64/imod_4.11.23_amd64.deb
Size: 339509696
MD5sum: eeb168291d6f1582e21c9a4b03a28323
SHA1: 4dcb977c0e6ef235f38286ae87f8b27595756aad
SHA256: bf199320eeefe18db9de50def0bd4480a49fd8aa72b8ee7b122757cac3330446
Section: science
Priority: optional
Homepage: https://bio3d.colorado.edu/imod/
Description: IMOD image processing, modeling and display programs for tomography
 IMOD is an open-source, cross-platform suite of modeling, display and image processing programs used for 3D reconstruction and modeling of microscopy images with a special emphasis on electron microscopy data. IMOD has been used across a range of scales from macromolecule structures to organelles to whole cells and can also be used for optical sections. Included in IMOD are tools for image reconstruction, image segmentation, 3D mesh modeling and analysis of 2D and 3D data.

Package: libcudnn8
Source: cudnn
Version: 8.6.0.163-1+cuda11.8
Architecture: amd64
Maintainer: cudatools <cudatools@nvidia.com>
Installed-Size: 1112799
Filename: dists/bullseye/non-free/binary-amd64/libcudnn8_8.6.0.163-1+cuda11.8_amd64.deb
Size: 446129624
MD5sum: 6334a35329b3187b9d3ef3296c044744
SHA1: b5b010dcce57c1f200433ac79091ab76b555c4c3
SHA256: 50ee5868ef2ed49f7aa68742971ce7d52471e5a2c53b74b98a89d9a50e9977ef
Section: multiverse/libs
Priority: optional
Description: cuDNN runtime libraries
 cuDNN runtime libraries containing primitives for deep neural networks.

Package: libptl-dev
Source: ptl
Version: 2.3.3-2
Architecture: amd64
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 1330
Depends: libptl2 (= 2.3.3-2), libtbb-dev
Filename: dists/bullseye/non-free/binary-amd64/libptl-dev_2.3.3-2_amd64.deb
Size: 280676
MD5sum: 517da0b28600b9b7e8d90fe9f15a421a
SHA1: 0cd20ffd2dea6133263e4f0982397bfabeace8b9
SHA256: f86dcc5fa4903c3a198bf3833ce1c61cd13b281cf9fd9e3feba3eddc7a27d129
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/jrmadsen/PTL
Description: parallel tasking library - development files
 PTL is a lightweight C++11 multithreading tasking system featuring
 a thread-pool, task-groups, and a lock-free task queue.
 .
 This package contains the development files.

Package: libptl2
Source: ptl
Version: 2.3.3-2
Architecture: amd64
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 225
Depends: libc6 (>= 2.30), libgcc-s1 (>= 3.0), libstdc++6 (>= 7), libtbb2 (>= 2017~U7)
Filename: dists/bullseye/non-free/binary-amd64/libptl2_2.3.3-2_amd64.deb
Size: 65512
MD5sum: 301d1cb917660d58f64a847bee6f6b3f
SHA1: 1937648adf26198f438d9ef58d9e6451d433110c
SHA256: 9a91ab6190178bde68bf56540f144f53bb426528c7b2d0caf0ac296ba4ae730f
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/jrmadsen/PTL
Description: parallel tasking library
 PTL is a lightweight C++11 multithreading tasking system featuring
 a thread-pool, task-groups, and a lock-free task queue.

Package: libvdt-dev
Source: vdt
Version: 0.4.4-3
Architecture: amd64
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 152
Depends: libvdt0.4 (= 0.4.4-3)
Filename: dists/bullseye/non-free/binary-amd64/libvdt-dev_0.4.4-3_amd64.deb
Size: 26960
MD5sum: 1a99472827a37fe77cc3fe4fa4a542ec
SHA1: bed0dcb2fdc9224860560235ba9edc2ec8219a9d
SHA256: 8f2d8f04517d67063cbd88173b7f91892e7654a28e0647b555b0558332d75a2d
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/dpiparo/vdt
Description: vectorised math library - development files
 This is vectorised math library
  - a collection of fast and inline implementations of mathematical functions
  - the functions can be used in autovectorised loops
  - double and single precision implementations are available
  - no overhead present, no intrinsics used
 .
 A scalar (T(T)) and array signature (void(const unsigned int, T*, T*)) are
 provided. Born and developed at CERN, it is used, among the others, by LHC
 experiments and the Geant4 simulation toolkit.
 .
 Much of the VDT code is inspired by the well known Cephes mathematical
 library.
 .
 This package contains the development files for vdt.

Package: libvdt0.4
Source: vdt
Version: 0.4.4-3
Architecture: amd64
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 64
Depends: libc6 (>= 2.29)
Filename: dists/bullseye/non-free/binary-amd64/libvdt0.4_0.4.4-3_amd64.deb
Size: 19480
MD5sum: 6243391b6d8b6a55345b637f53b10494
SHA1: b07d244e6829831c17a8134075fcf222087ffc9e
SHA256: 1569a301ad5b6ac628ecd8cc0e0cb8ce5b899abc61f2c0bfb537cca33c28d82e
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/dpiparo/vdt
Description: vectorised math library
 This is vectorised math library
  - a collection of fast and inline implementations of mathematical functions
  - the functions can be used in autovectorised loops
  - double and single precision implementations are available
  - no overhead present, no intrinsics used
 .
 A scalar (T(T)) and array signature (void(const unsigned int, T*, T*)) are
 provided. Born and developed at CERN, it is used, among the others, by LHC
 experiments and the Geant4 simulation toolkit.
 .
 Much of the VDT code is inspired by the well known Cephes mathematical
 library.

Package: mcrinstaller-v98
Version: 1.0
Architecture: amd64
Maintainer: Mathworks <matlab@mathworks.com>
Installed-Size: 6365156
Filename: dists/bullseye/non-free/binary-amd64/mcrinstaller-v98_1.0_amd64.deb
Size: 1906888456
MD5sum: 2a550edbb47c263e0a6f279dde4f6da5
SHA1: bd2023022b73924dc4f840b9561e1bcd36f05a00
SHA256: 33e834c45177b2762e9436d4aea85be061b3769099e54c50e62d8f96cbb75f65
Section: science
Priority: optional
Homepage: https://fr.mathworks.com/help/compiler_sdk/dotnet/install-the-matlab-runtime.html
Description: Matlab Runtime (v9.8)
 The MATLAB Runtime is a standalone set of shared libraries that enables the execution of compiled MATLAB applications or components.

Package: megacli
Source: megacli (8.07.14-3)
Version: 8.07.14-3+Debian.11.bullseye
Architecture: amd64
Maintainer: Adam Cécile (Le_Vert) <gandalf@le-vert.net>
Installed-Size: 6695
Depends: libc6 (>= 2.3), libgcc-s1 (>= 3.0), libncurses5 (>= 6), libstdc++6 (>= 4.1.1)
Conflicts: megaclisas
Replaces: megaclisas
Provides: megaclisas
Filename: dists/bullseye/non-free/binary-amd64/megacli_8.07.14-3+Debian.11.bullseye_amd64.deb
Size: 4174162
MD5sum: 80ceeb13477907a514e938ca1c18f1a4
SHA1: 1ea68a1c6a404dcc38c41b06e092dc414ae2a046
SHA256: 2378ee4b33774a54b082faecda6e9b659a3e7416def313bc3d7f7aadc413b97e
Section: admin
Priority: optional
Homepage: http://www.lsi.com/support/Pages/Download-Results.aspx?keyword=megacli
Description: LSI Logic MegaRAID SAS MegaCLI
 Tool to read and setup LSI Logic MegaRAID SAS HW RAID HBAs.

Package: megaclisas-status
Source: megaclisas-status (0.18)
Version: 0.18+Debian.11.bullseye
Architecture: all
Maintainer: Adam Cécile (Le_Vert) <gandalf@le-vert.net>
Installed-Size: 63
Depends: python3, lsb-base, daemon, bsd-mailx | mailx, megacli
Filename: dists/bullseye/non-free/binary-amd64/megaclisas-status_0.18+Debian.11.bullseye_all.deb
Size: 14174
MD5sum: bce6c0342941af23b59333b3ac22191d
SHA1: 63fdf732cb2635fa1e0214bf0d4da84c76084453
SHA256: e8de6ba750733bc62a7afc78d09ad30dba04ca9943e0e808696346e31b50acf1
Section: admin
Priority: optional
Description: get RAID status out of LSI MegaRAID SAS HW RAID controllers
 The megacli-status software is a query tool to access the running
 configuration and status of LSI MegaRAID SAS HBAs.
 .
 It uses LSI MegaCli proprietary command line tool.

Package: phon
Version: 1.41
Architecture: amd64
Maintainer: Dario Alfè <d.alfe@ucl.ac.uk>
Installed-Size: 3460
Depends: bash
Filename: dists/bullseye/non-free/binary-amd64/phon_1.41_amd64.deb
Size: 1033156
MD5sum: 53d8bf19d2860be6db5d4ff834aedd33
SHA1: 4024cfe0b301f197f37049bc163699396d73ba40
SHA256: 2d3710b90bd7dad4ac185a6cc9002560173cb692b810f82d07f71a9a75e0dccd
Section: Science
Priority: optional
Homepage: http://www.homepages.ucl.ac.uk/~ucfbdxa/phon/
Description: PHON - A program to calculate phonons using the small displacement method
 .
 The program PHON calculates force constant matrices and phonon frequencies in crystals. From the frequencies it also calculates various thermodynamic quantities, like the Helmholtz free energy, the entropy, the specific heat and the internal energy of the harmonic crystal. The procedure is based on the small displacement method, and can be used in combination with any program capable to calculate forces on the atoms of the crystal.
 .
 This version can treat large lists of HKL points where to compute the eigen-energies.
 .
 Documentation is in /usr/local/phon/doc
 .
 Packaged by E. Farhi, ILL.

Package: pynx
Version: 2021.1~b0-1
Architecture: all
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 40
Depends: python3-pynx (>= 2021.1~b0-1), python3-numpy, python3:any (>= 3.2~)
Filename: dists/bullseye/non-free/binary-amd64/pynx_2021.1~b0-1_all.deb
Size: 12476
MD5sum: ff7f63d2845ae41830a858a1e3f65147
SHA1: fe666e642624bb0d6ed60ee0ef8c98247aafeaa4
SHA256: 415159fcf0217c5839dc25807e13c90ed448abbff43b4f492d8957505926ea2e
Section: science
Priority: optional
Homepage: http://ftp.esrf.fr/pub/scisoft/PyNX/doc/
Description: Python tools for Nano-structures Crystallography (Scripts)
 PyNX stands for *Python tools for Nano-structures Crystallography*.
 It is a python library with the following main modules:
 .
 1) pynx.scattering: *X-ray scattering computing using graphical
 processing units*, allowing up to 2.5x10^11 reflections/atoms/seconds
 (single nVidia Titan X). The sub-module``pynx.scattering.gid`` can be
 used for *Grazing Incidence Diffraction* calculations, using the
 Distorted Wave Born Approximation
 .
 2) pynx.ptycho : simulation and analysis of experiments using the
 *ptychography* technique, using either CPU (deprecated) or GPU using
 OpenCL.  Examples are available in the pynx/Examples
 directory. Scripts for analysis of raw data from beamlines are also
 available, as well as using or producing ptychography data sets in
 CXI (Coherent X-ray Imaging) format.
 .
 3) pynx.wavefront: *X-ray wavefront propagation* in the near, far
 field, or continuous (examples available at the end of
 ``wavefront.py``).  Also provided are sub-modules for Fresnel
 propagation and simulation of the illumination from a Fresnel Zone
 Plate, both using OpenCL for high performance computing.
 .
 4) pynx.cdi: *Coherent Diffraction Imaging* reconstruction algorithms
 using GPU.
 .
 In addition, it includes :doc:`scripts <scripts/index>` for
 command-line processing of ptychography data from generic CXI data
 (pynx-cxipty.py) or specific to beamlines (pynx-id01pty.py,
 pynx-id13pty.py,...).

Package: python-pynx-doc
Source: pynx
Version: 2021.1~b0-1
Architecture: all
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 17
Filename: dists/bullseye/non-free/binary-amd64/python-pynx-doc_2021.1~b0-1_all.deb
Size: 10616
MD5sum: 9658ed43da16d8ffa1dfb0249ea116b4
SHA1: de7561406180a5f7ce870cc3c92859c4b5e73526
SHA256: b5270f7356b2c136dc0d0831805194faa489c834fade03618453cb2eb5c17b8b
Section: doc
Priority: optional
Homepage: http://ftp.esrf.fr/pub/scisoft/PyNX/doc/
Description: Python tools for Nano-structures Crystallography (common documentation)
 PyNX stands for *Python tools for Nano-structures Crystallography*.
 It is a python library with the following main modules:
 .
 1) pynx.scattering: *X-ray scattering computing using graphical
 processing units*, allowing up to 2.5x10^11 reflections/atoms/seconds
 (single nVidia Titan X). The sub-module``pynx.scattering.gid`` can be
 used for *Grazing Incidence Diffraction* calculations, using the
 Distorted Wave Born Approximation
 .
 2) pynx.ptycho : simulation and analysis of experiments using the
 *ptychography* technique, using either CPU (deprecated) or GPU using
 OpenCL.  Examples are available in the pynx/Examples
 directory. Scripts for analysis of raw data from beamlines are also
 available, as well as using or producing ptychography data sets in
 CXI (Coherent X-ray Imaging) format.
 .
 3) pynx.wavefront: *X-ray wavefront propagation* in the near, far
 field, or continuous (examples available at the end of
 ``wavefront.py``).  Also provided are sub-modules for Fresnel
 propagation and simulation of the illumination from a Fresnel Zone
 Plate, both using OpenCL for high performance computing.
 .
 4) pynx.cdi: *Coherent Diffraction Imaging* reconstruction algorithms
 using GPU.
 .
 In addition, it includes :doc:`scripts <scripts/index>` for
 command-line processing of ptychography data from generic CXI data
 (pynx-cxipty.py) or specific to beamlines (pynx-id01pty.py,
 pynx-id13pty.py,...).
 .
 This is the common documentation package.

Package: python3-pynx
Source: pynx
Version: 2021.1~b0-1
Architecture: amd64
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 3783
Depends: python3-numpy (>= 1:1.16.0~rc1), python3-numpy-abi9, python3 (<< 3.10), python3 (>= 3.9~), python3:any (>= 3.2~), libc6 (>= 2.4)
Suggests: python-pynx-doc
Filename: dists/bullseye/non-free/binary-amd64/python3-pynx_2021.1~b0-1_amd64.deb
Size: 451876
MD5sum: 643c923ac6c825970a64af492bdda4d5
SHA1: b7d8c80ea0caec249dd48775ed36e472e02b5540
SHA256: 903685d7d38662ad9408af5ab772f8289eca578ebe5ee6a531f02eff87429aed
Section: python
Priority: optional
Homepage: http://ftp.esrf.fr/pub/scisoft/PyNX/doc/
Description: Python tools for Nano-structures Crystallography (Python 3)
 PyNX stands for *Python tools for Nano-structures Crystallography*.
 It is a python library with the following main modules:
 .
 1) pynx.scattering: *X-ray scattering computing using graphical
 processing units*, allowing up to 2.5x10^11 reflections/atoms/seconds
 (single nVidia Titan X). The sub-module``pynx.scattering.gid`` can be
 used for *Grazing Incidence Diffraction* calculations, using the
 Distorted Wave Born Approximation
 .
 2) pynx.ptycho : simulation and analysis of experiments using the
 *ptychography* technique, using either CPU (deprecated) or GPU using
 OpenCL.  Examples are available in the pynx/Examples
 directory. Scripts for analysis of raw data from beamlines are also
 available, as well as using or producing ptychography data sets in
 CXI (Coherent X-ray Imaging) format.
 .
 3) pynx.wavefront: *X-ray wavefront propagation* in the near, far
 field, or continuous (examples available at the end of
 ``wavefront.py``).  Also provided are sub-modules for Fresnel
 propagation and simulation of the illumination from a Fresnel Zone
 Plate, both using OpenCL for high performance computing.
 .
 4) pynx.cdi: *Coherent Diffraction Imaging* reconstruction algorithms
 using GPU.
 .
 In addition, it includes :doc:`scripts <scripts/index>` for
 command-line processing of ptychography data from generic CXI data
 (pynx-cxipty.py) or specific to beamlines (pynx-id01pty.py,
 pynx-id13pty.py,...).
 .
 This package installs the library for Python 3.

Package: root
Source: https://github.com/root-project/root.git
Version: 6.26-10-bullseye
Architecture: amd64
Maintainer: R. Brun, F. Rademakers <root-dev@cern.ch>
Installed-Size: 513064
Depends: cmake, g++, gcc, binutils, libx11-dev, libxpm-dev, libxft-dev, libxext-dev, python3, libssl-dev, gfortran, libpcre3-dev, xlibmesa-glu-dev, libglew-dev, libftgl-dev, default-libmysqlclient-dev, libfftw3-dev, libcfitsio-dev, graphviz-dev, python3-dev, libxml2-dev, libgsl0-dev, qtwebengine5-dev
Filename: dists/bullseye/non-free/binary-amd64/root_6.26-10-bullseye_amd64.deb
Size: 139213568
MD5sum: 7bacce35625f68973fb6a133d038acbb
SHA1: 2652b68d5fe1e098ee8821be2788a83d9e9cde57
SHA256: d5941b9336c85d606986fff765089c33c9631309c549ef80b25ea15048cc4086
Section: science
Priority: optional
Homepage: https://root.cern/
Description: CERN ROOT An open-source data analysis framework used by high energy physics and others.
 ROOT is a framework for data processing, born at CERN, at the heart of the research on high-energy physics. Every day, thousands of physicists use ROOT applications to analyze their data or to perform simulations. With ROOT you can:
 .
     Save data You can save your data (and any C++ object) in a compressed binary form in a ROOT file. The object format is also saved in the same file: the ROOT files are self-descriptive. Even in the case the source files describing the data model are not available, the information contained in a ROOT file is be always readable. ROOT provides a data structure, the tree, that is extremely powerful for fast access of huge amounts of data - orders of magnitude faster than accessing a normal file.
 .
     Access data Data saved into one or several ROOT files can be accessed from your PC, from the web and from large-scale file delivery systems used e.g. in the GRID. ROOT trees spread over several files can be chained and accessed as a unique object, allowing for loops over huge amounts of data.
 .
     Mine data Powerful mathematical and statistical tools are provided to operate on your data. The full power of a C++ application and of parallel processing is available for any kind of data manipulation. Data can also be generated following any statistical distribution and modeled, making it possible to simulate complex systems.
 .
     Publish results Results can be displayed with histograms, scatter plots, fitting functions. ROOT graphics may be adjusted real-time by few mouse clicks. Publication-quality figures can be saved in PDF or other formats.
 .
     Run interactively or build your own application You can use the Cling C++ interpreter for your interactive sessions and to write macros, or you can compile your program to run at full speed. In both cases, you can also create a graphical user interface.
 .
     Use ROOT within other languages ROOT provides a set of bindings in order to seamlessly integrate with existing languages such as Python and R.

Package: rstudio
Version: 2022.12.0+353
Architecture: amd64
Maintainer: RStudio <info@posit.co>
Installed-Size: 661236
Depends: libssl1.0.0 | libssl1.0.2 | libssl1.1, libclang-dev, libxkbcommon-x11-0, libsqlite3-0, libpq5,  libc6 (>= 2.7)
Suggests: r-base (>= 3.3.0)
Filename: dists/bullseye/non-free/binary-amd64/rstudio-2022.12.0-353-amd64.deb
Size: 131196584
MD5sum: 4d78dc4caa6fc942b9292659a87dea80
SHA1: 693038aa16fbbf8ffb7883b3a31296ebb99235d6
SHA256: 23cae58f8ed1a7d7b96b266287a2fde67871b112339bbb95a203c6e672920083
Section: devel
Priority: optional
Description: RStudio
 RStudio is a set of integrated tools designed to help you be more productive with R. It includes a console, syntax-highlighting editor that supports direct code execution, as well as tools for plotting, history, and workspace management.

Package: seamonkey-mozilla-build
Version: 2.31-0ubuntu1
Architecture: amd64
Maintainer: Daniel Folkinshteyn <nanotube@users.sourceforge.net>
Provides: seamonkey
Filename: dists/bullseye/non-free/binary-amd64/seamonkey-mozilla-build_2.31-0ubuntu1_amd64.deb
Size: 41194634
MD5sum: f2f64f1eb62d218e29bfe20c9221cd49
SHA1: 99aa3fa4feb700387a786434c2cbf09e676b15d9
SHA256: ae24ecba36ff8576393a7ce9531915e0a305c22e6236e5fd6fa03853f03a7f4a
Description: Mozilla Seamonkey, official Mozilla build, packaged for Ubuntu by the Ubuntuzilla project.
 This is the unmodified Mozilla release binary of Seamonkey, packaged into a .deb by the Ubuntuzilla project.
 .
 It is strongly recommended that you back up your application profile data before installing, just in case. We really mean it!
 .
 Ubuntuzilla project homepage:
 http://ubuntuzilla.sourceforge.net/
 .
 Mozilla project homepage:
 http://www.mozilla.com

Package: simple
Source: https://github.com/hael/SIMPLE
Version: 3.0.2-beta
Architecture: amd64
Maintainer: hael Hans <hans.elmlund@nih.gov>
Installed-Size: 1170108
Depends: libfftw3-dev, libfftw3-dev, gnuplot, libopenmpi-dev, libjpeg-dev, libsqlite3-dev, jbigkit-bin, libjbig-dev, libtiff-dev, libwebp-dev, libdeflate-dev
Recommends: nvidia-cuda-dev
Filename: dists/bullseye/non-free/binary-amd64/simple_3.0.2-beta_amd64.deb
Size: 398036080
MD5sum: f75c9debd8152bc3ceb15e3bf189f08a
SHA1: 28c1bddc2e7b64e965586e0b494bc1272e44380e
SHA256: d210ea21b5ca6660cfc154fa29e1d42865a57eca6eed1a080228b69d8a8ce447
Section: science
Priority: optional
Homepage: https://simplecryoem.com/
Description: Single-particle IMage Processing Linux Engine
 Single-particle IMage Processing Linux Engine (SIMPLE) is an open-source software package for analysis of cryogenic transmission electron microscopy (cryo-EM) movies of single-particles (Single-Particle Analysis, SPA). SIMPLE 3.0 provides many new features, including a full SPA processing pipeline and a streaming SPA platform for informing data acquisition in real time, using only minimal CPU computing resources. Our stream SPA tool implements the steps of anisotropic motion correction, particle identification and 2D clustering with automatic class rejection. SIMPLE 3.0 additionally features an easy-to-use web-based graphical user interface that can be run on any device (workstation, laptop, tablet or iphone) and supports remote multi-user execution over the network. The new project-based execution model automatically records the executed workflow, facilitates meta-data handling and greatly simplifies usage. Using SIMPLE 3.0, it is possible to automatically obtain a clean SP data set amenable to high-resolution 3D reconstruction directly upon completion of the data acquisition, without the need for extensive batch image processing.

Package: spectra
Version: 11.0
Architecture: amd64
Maintainer: Takashi Tanaka <admin@spectrax.org>
Installed-Size: 238668
Depends: libx11-6, libglib2.0-0, libatk1.0-0, libgtk-3-0, libpangocairo-1.0-0, libexpat1, libbrotli1, libgmp10, libk5crypto3, libgraphite2-3, liblz4-1, libzstd1, libpng16-16
Filename: dists/bullseye/non-free/binary-amd64/spectra_11.0_amd64.deb
Size: 62472708
MD5sum: 6e949e1fc5750ac96b1b9857e699a152
SHA1: f920dd5cedaf8505c858d3ae46cf5200339a190f
SHA256: 303c8baf9b4017a085faa0b094576eeb35a5334c72a28c0bad927a0c08944b3a
Section: science
Priority: optional
Homepage: https://spectrax.org/spectra/
Description: SPECTRA: a synchrotron radiation calculation code
 SPECTRA is an application software to calculate optical properties of synchrotron radiation (SR) emitted from bending magnets, wigglers (conventional and elliptical) and undulators (conventional, helical, elliptical and figure-8). Calculations of radiation from an arbitrary magnetic field distribution are also available. Parameters on the electron beam and the source can be edited completely on graphical user interfaces (GUIs) and it is possible to show the calculation result graphically. The energy spectrum and radiation power after transmitting various filters and convolution of detector's resolution are also available.

Package: vasp
Version: 4.6-ubuntu2204
Architecture: amd64
Maintainer: Georg Kresse <vasp.materialphysik@univie.ac.at>
Installed-Size: 124256
Depends: libopenblas-dev, openmpi-bin, gfortran
Filename: dists/bullseye/non-free/binary-amd64/vasp_4.6-ubuntu2204_amd64.deb
Size: 54684080
MD5sum: 5caabae902f0b0d4258c459b1b0785ed
SHA1: d7b0481990fef26a319698351577400bead5cda5
SHA256: 9e56f28f7f42b7fae41d00aeaa1c2b341b5667b15c274035da02d548414f979a
Section: science
Priority: optional
Description: Vienna Ab initio Simulation Package (VASP) Plane-wave PAW code
 The Vienna Ab initio Simulation Package (VASP) is a computer program for atomic scale materials modelling, e.g. electronic structure calculations and quantum-mechanical molecular dynamics, from first principles.
 .
 VASP computes an approximate solution to the many-body Schrödinger equation, either within density functional theory (DFT), solving the Kohn-Sham equations, or within the Hartree-Fock (HF) approximation, solving the Roothaan equations. Hybrid functionals that mix the Hartree-Fock approach with density functional theory are implemented as well. Furthermore, Green's functions methods (GW quasiparticles, and ACFDT-RPA) and many-body perturbation theory (2nd-order Møller-Plesset) are available in VASP.
 .
 In VASP, central quantities, like the one-electron orbitals, the electronic charge density, and the local potential are expressed in plane wave basis sets. The interactions between the electrons and ions are described using norm-conserving or ultrasoft pseudopotentials, or the projector-augmented-wave method.
 .
 To determine the electronic groundstate, VASP makes use of efficient iterative matrix diagonalisation techniques, like the residual minimisation method with direct inversion of the iterative subspace (RMM-DIIS) or blocked Davidson algorithms. These are coupled to highly efficient Broyden and Pulay density mixing schemes to speed up the self-consistency cycle.
 .
 compiled with OpenMPI, OpenBlas (gotoblas) and gfortran3
 contains pseudo LDA, GGA and PBE for PAW in /usr/share/vasp/pseudo (feb 2004)

Package: veccore-dev
Source: veccore
Version: 0.8.0+ds1-2
Architecture: amd64
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 104
Recommends: vc-dev
Filename: dists/bullseye/non-free/binary-amd64/veccore-dev_0.8.0+ds1-2_amd64.deb
Size: 15188
MD5sum: fb67c3139678e136f4ff8d4308dba819
SHA1: 849f7c084aa98e33d145904ae2f2ae0dc52b9e37
SHA256: 7e0b749e1df66a6595b25236b5983f85c389e93b357d0ce0a1cc8ae64746e651
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/root-project/veccore
Description: simple abstraction layer on top of other vectorization libraries
 It provides an architecture-independent API for expressing vector operations
 on data. Code written with this API can then be dispatched to one of several
 backends like Vc, or a scalar implementation. This allows one to get the best
 performance on platforms supported by Vc without losing portability to
 unsupported architectures like ARM and PowerPC, for example, where the scalar
 backend can be used instead without requiring changes in user code.

Package: xkb-switch
Version: 1.6.0-0
Architecture: amd64
Maintainer: Tomas Ravinskas <tomas.rav@gmail.com>
Installed-Size: 80
Depends: libc6 (>= 2.14), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2), libx11-6, libxkbfile1
Filename: dists/bullseye/non-free/binary-amd64/xkb-switch_1.6.0-0_amd64.deb
Size: 18572
MD5sum: 713b14e7f982fe19ec9f9a81bc496197
SHA1: 1b8587c637b22d4a388cfb2aaffe8f6ee8d3e9c5
SHA256: f79214f13fbaed385de496872435997522019844117d8da921f1a711dbc87d8b
Section: misc
Priority: optional
Homepage: https://github.com/ierton/xkb-switch
Description: Query and change the XKB layout state.
 xkb-switch is a C++ program that allows one to query and
 change the XKB layout state.

Package: xsocs
Version: 2020.1.0-1
Architecture: amd64
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 1730
Depends: python3-opengl, python3-pyqt5, python3-fabio, python3-h5py-serial, python3-numpy, python3-pkg-resources, python3-scipy (>= 0.14.0), python3-silx (>= 0.9.0), python3-xrayutilities, python3:any, libc6 (>= 2.14)
Recommends: xsocs-doc
Filename: dists/bullseye/non-free/binary-amd64/xsocs_2020.1.0-1_amd64.deb
Size: 394660
MD5sum: 80eca30f71db2aff60deb1edc726111b
SHA1: 4302787d5513ba88ec0c14d11c34b16aadcd725b
SHA256: 42f467bc21b0a3d081acaaa74d492b891fb69cee4d443b67a10c4e112e451b3d
Section: python
Priority: optional
Homepage: https://gitlab.esrf.fr/kmap/xsocs/
Description: Automatic analysis of 5D sets of data (Python 3)
 The X-ray Strain Orientation Calculation Software (X-SOCS) is a
 user-friendly software, developed for automatic analysis of 5D sets
 of data recorded during continuous mapping measurements. X-SOCS aims
 at retrieving strain and tilt maps of nanostructures, films, surfaces
 or even embedded structures.
 .
 This is the Python3 version of the package.

Package: xsocs-doc
Source: xsocs
Version: 2020.1.0-1
Architecture: all
Maintainer: Debian Science Maintainers <debian-science-maintainers@lists.alioth.debian.org>
Installed-Size: 1340
Depends: libjs-sphinxdoc (>= 2.4.3-5~)
Filename: dists/bullseye/non-free/binary-amd64/xsocs-doc_2020.1.0-1_all.deb
Size: 994344
MD5sum: 7737d1d4fe6aeb0c4ea3085ba24c977b
SHA1: 2dc534d0c694abee560eeb86293348d062db9ea3
SHA256: c9081a017b3ff696758111e83a40a5f102e5129878fae9899306bb60dc0ef06a
Section: doc
Priority: optional
Homepage: https://gitlab.esrf.fr/kmap/xsocs/
Description: Automatic analysis of 5D sets of data (documentation)
 The X-ray Strain Orientation Calculation Software (X-SOCS) is a
 user-friendly software, developed for automatic analysis of 5D sets
 of data recorded during continuous mapping measurements. X-SOCS aims
 at retrieving strain and tilt maps of nanostructures, films, surfaces
 or even embedded structures.
 .
 This package includes the manual in HTML format.